Index

Symbols

--allow-preemptible fovus-job-create command line option fovus-pipeline-submit-job command line option --auto-delete-days fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-submit-job command line option --benchmarking-profile-name fovus-job-create command line option fovus-pipeline-submit-job command line option --capacity-reservation fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-submit-job command line option --clear-storage-connectors fovus-pipeline-resume command line option --computing-device fovus-job-create command line option fovus-pipeline-submit-job command line option --config fovus-pipeline-create command line option fovus-pipeline-resume command line option --debug fovus command line option fovus-job-live-tail command line option --debug-mode fovus-job-create command line option fovus-pipeline-submit-job command line option --docker-hub-password fovus-job-create command line option fovus-pipeline-submit-job command line option --docker-hub-username fovus-job-create command line option fovus-pipeline-submit-job command line option --dry-run fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-submit-job command line option --email fovus-auth-login command line option --email-notification fovus-job-create command line option fovus-pipeline-submit-job command line option --empty-dir fovus-pipeline-upload command line option fovus-storage-upload command line option --enable-hyperthreading fovus-job-create command line option fovus-pipeline-submit-job command line option --exclude-paths fovus-job-create command line option fovus-job-download command line option fovus-job-sync command line option fovus-pipeline-create command line option fovus-pipeline-download command line option fovus-pipeline-resume command line option fovus-pipeline-submit-job command line option fovus-pipeline-upload command line option fovus-storage-download command line option fovus-storage-upload command line option --exit-on-non-complete fovus-job-status command line option --gov fovus-auth-login command line option --include-paths fovus-job-create command line option fovus-job-download command line option fovus-job-sync command line option fovus-pipeline-create command line option fovus-pipeline-download command line option fovus-pipeline-resume command line option fovus-pipeline-submit-job command line option fovus-pipeline-upload command line option fovus-storage-download command line option fovus-storage-upload command line option --is-compute-node-reuse-enabled fovus-job-create command line option fovus-pipeline-submit-job command line option --is-hybrid-strategy-allowed fovus-job-create command line option fovus-pipeline-submit-job command line option --is-memory-auto-retry-enabled fovus-job-create command line option fovus-pipeline-submit-job command line option --is-memory-checkpointing-enabled fovus-job-create command line option fovus-pipeline-submit-job command line option --is-multi-region-scaling-allowed fovus-job-create command line option fovus-pipeline-submit-job command line option --is-resumable-workload fovus-job-create command line option fovus-pipeline-submit-job command line option --is-retry-if-matched-enabled fovus-job-create command line option fovus-pipeline-submit-job command line option --is-single-threaded-task fovus-job-create command line option fovus-pipeline-submit-job command line option --is-subject-to-license-availability fovus-job-create command line option fovus-pipeline-submit-job command line option --job-directory fovus-job-live-tail command line option fovus-job-status command line option fovus-job-sync command line option --job-id fovus-job-create command line option fovus-job-download command line option fovus-job-live-tail command line option fovus-job-status command line option fovus-job-sync command line option fovus-job-terminate command line option fovus-pipeline-submit-job command line option fovus-task-list command line option fovus-task-terminate command line option --job-max-cluster-size-vcpu fovus-job-create command line option fovus-pipeline-submit-job command line option --job-name fovus-job-create command line option fovus-pipeline-submit-job command line option --last-job-id fovus-job-create command line option fovus-pipeline-submit-job command line option --license-consumption-profile fovus-job-create command line option fovus-pipeline-submit-job command line option --license-timeout-hours fovus-job-create command line option fovus-pipeline-submit-job command line option --limit fovus-task-list command line option --log fovus command line option --max-gpu fovus-job-create command line option fovus-pipeline-submit-job command line option --max-retry-attempts fovus-job-create command line option fovus-pipeline-submit-job command line option --max-vcpu fovus-job-create command line option fovus-pipeline-submit-job command line option --min-gpu fovus-job-create command line option fovus-pipeline-submit-job command line option --min-gpu-mem-gib fovus-job-create command line option fovus-pipeline-submit-job command line option --min-vcpu fovus-job-create command line option fovus-pipeline-submit-job command line option

--min-vcpu-mem-gib fovus-job-create command line option fovus-pipeline-submit-job command line option --monolithic-override fovus-job-create command line option fovus-pipeline-submit-job command line option --mount-storage-path fovus-storage-cached-mount command line option fovus-storage-mount command line option --name fovus-pipeline-create command line option --next_start_key fovus-task-list command line option --nextflow fovus command line option --no-auto-remount fovus-storage-mount command line option --no-email-notification fovus-job-create command line option fovus-pipeline-submit-job command line option --output-file-list fovus-job-create command line option fovus-pipeline-submit-job command line option --output-file-option fovus-job-create command line option fovus-pipeline-submit-job command line option --override fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-submit-job command line option --parallelism-config-files fovus-job-create command line option fovus-pipeline-submit-job command line option --parallelism-optimization fovus-job-create command line option fovus-pipeline-submit-job command line option --password fovus-auth-login command line option --pipeline-directory fovus-pipeline-create command line option --pipeline-id fovus-job-create command line option fovus-pipeline-delete command line option fovus-pipeline-download command line option fovus-pipeline-resume command line option fovus-pipeline-stop command line option fovus-pipeline-submit-job command line option --post-processing-run-command fovus-job-create command line option fovus-pipeline-submit-job command line option --post-processing-storage-gib fovus-job-create command line option fovus-pipeline-submit-job command line option --post-processing-task-name fovus-job-create command line option fovus-pipeline-submit-job command line option --post-processing-walltime-hours fovus-job-create command line option fovus-pipeline-submit-job command line option --project-name fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-submit-job command line option --range fovus-job-download command line option --recursive fovus-storage-list command line option --remote-inputs fovus-job-create command line option fovus-pipeline-submit-job command line option --retry-type fovus-job-create command line option fovus-pipeline-submit-job command line option --run-command fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-resume command line option fovus-pipeline-submit-job command line option --scalable-parallelism fovus-job-create command line option fovus-pipeline-submit-job command line option --scheduled-at fovus-job-create command line option fovus-pipeline-submit-job command line option --search-output-files fovus-job-create command line option fovus-pipeline-submit-job command line option --search-output-keywords fovus-job-create command line option fovus-pipeline-submit-job command line option --setup-command fovus-pipeline-create command line option fovus-pipeline-resume command line option --shared-with-me fovus-storage-list command line option --shared-with-workspace fovus-storage-list command line option --silence fovus command line option --storage-connectors fovus-job-create command line option fovus-pipeline-create command line option fovus-pipeline-resume command line option fovus-pipeline-submit-job command line option --storage-gib fovus-job-create command line option fovus-pipeline-submit-job command line option --supported-cpu-architectures fovus-job-create command line option fovus-pipeline-submit-job command line option --task-id fovus-task-terminate command line option --task-ids fovus-task-list command line option --task-name fovus-task-terminate command line option --task-names fovus-task-list command line option --time-to-cost-priority-ratio fovus-job-create command line option fovus-pipeline-submit-job command line option --wait fovus-job-status command line option --wait-until-status-is fovus-job-download command line option --walltime-hours fovus-job-create command line option fovus-pipeline-submit-job command line option --windows-drive fovus-storage-mount command line option --workflow-host fovus-pipeline-create command line option --workflow-manager fovus-pipeline-create command line option --workflow-manager-version fovus-pipeline-create command line option -c fovus-pipeline-create command line option fovus-pipeline-resume command line option -d fovus command line option -e fovus-auth-login command line option -g fovus-auth-login command line option -l fovus command line option -nf fovus command line option -p fovus-auth-login command line option -s fovus command line option

D

DESTINATION fovus-storage-copy command line option fovus-storage-move command line option

F

FILE_PATH fovus-job-live-tail command line option fovus command line option --debug --log --nextflow --silence -d -l -nf -s fovus-auth-login command line option --email --gov --password -e -g -p fovus-job-create command line option --allow-preemptible --auto-delete-days --benchmarking-profile-name --capacity-reservation --computing-device --debug-mode --docker-hub-password --docker-hub-username --dry-run --email-notification --enable-hyperthreading --exclude-paths --include-paths --is-compute-node-reuse-enabled --is-hybrid-strategy-allowed --is-memory-auto-retry-enabled --is-memory-checkpointing-enabled --is-multi-region-scaling-allowed --is-resumable-workload --is-retry-if-matched-enabled --is-single-threaded-task --is-subject-to-license-availability --job-id --job-max-cluster-size-vcpu --job-name --last-job-id --license-consumption-profile --license-timeout-hours --max-gpu --max-retry-attempts --max-vcpu --min-gpu --min-gpu-mem-gib --min-vcpu --min-vcpu-mem-gib --monolithic-override --no-email-notification --output-file-list --output-file-option --override --parallelism-config-files --parallelism-optimization --pipeline-id --post-processing-run-command --post-processing-storage-gib --post-processing-task-name --post-processing-walltime-hours --project-name --remote-inputs --retry-type --run-command --scalable-parallelism --scheduled-at --search-output-files --search-output-keywords --storage-connectors --storage-gib --supported-cpu-architectures --time-to-cost-priority-ratio --walltime-hours JOB_CONFIG_FILE_PATH JOB_DIRECTORY fovus-job-delete command line option JOB_ID fovus-job-download command line option --exclude-paths --include-paths --job-id --range --wait-until-status-is JOB_DIRECTORY fovus-job-live-tail command line option --debug --job-directory --job-id FILE_PATH fovus-job-status command line option --exit-on-non-complete --job-directory --job-id --wait fovus-job-sync command line option --exclude-paths --include-paths --job-directory --job-id fovus-job-terminate command line option --job-id JOB_DIRECTORY fovus-pipeline-create command line option --auto-delete-days --capacity-reservation --config --dry-run --exclude-paths --include-paths --name --override --pipeline-directory --project-name --run-command --setup-command --storage-connectors --workflow-host --workflow-manager --workflow-manager-version -c PIPELINE_DIRECTORY fovus-pipeline-delete command line option --pipeline-id fovus-pipeline-download command line option --exclude-paths --include-paths --pipeline-id PIPELINE_DIRECTORY

fovus-pipeline-resume command line option --clear-storage-connectors --config --exclude-paths --include-paths --pipeline-id --run-command --setup-command --storage-connectors -c PIPELINE_DIRECTORY fovus-pipeline-stop command line option --pipeline-id fovus-pipeline-submit-job command line option --allow-preemptible --auto-delete-days --benchmarking-profile-name --capacity-reservation --computing-device --debug-mode --docker-hub-password --docker-hub-username --dry-run --email-notification --enable-hyperthreading --exclude-paths --include-paths --is-compute-node-reuse-enabled --is-hybrid-strategy-allowed --is-memory-auto-retry-enabled --is-memory-checkpointing-enabled --is-multi-region-scaling-allowed --is-resumable-workload --is-retry-if-matched-enabled --is-single-threaded-task --is-subject-to-license-availability --job-id --job-max-cluster-size-vcpu --job-name --last-job-id --license-consumption-profile --license-timeout-hours --max-gpu --max-retry-attempts --max-vcpu --min-gpu --min-gpu-mem-gib --min-vcpu --min-vcpu-mem-gib --monolithic-override --no-email-notification --output-file-list --output-file-option --override --parallelism-config-files --parallelism-optimization --pipeline-id --post-processing-run-command --post-processing-storage-gib --post-processing-task-name --post-processing-walltime-hours --project-name --remote-inputs --retry-type --run-command --scalable-parallelism --scheduled-at --search-output-files --search-output-keywords --storage-connectors --storage-gib --supported-cpu-architectures --time-to-cost-priority-ratio --walltime-hours JOB_CONFIG_FILE_PATH JOB_DIRECTORY fovus-pipeline-upload command line option --empty-dir --exclude-paths --include-paths FOVUS_PATH LOCAL_PATH fovus-storage-cached-mount command line option --mount-storage-path fovus-storage-copy command line option DESTINATION SOURCES fovus-storage-download command line option --exclude-paths --include-paths FOVUS_PATH LOCAL_PATH fovus-storage-list command line option --recursive --shared-with-me --shared-with-workspace FOVUS_PATH fovus-storage-mount command line option --mount-storage-path --no-auto-remount --windows-drive fovus-storage-move command line option DESTINATION SOURCES fovus-storage-upload command line option --empty-dir --exclude-paths --include-paths FOVUS_PATH LOCAL_PATH fovus-task-list command line option --job-id --limit --next_start_key --task-ids --task-names fovus-task-terminate command line option --job-id --task-id --task-name JOB_DIRECTORY FOVUS_PATH fovus-pipeline-upload command line option fovus-storage-download command line option fovus-storage-list command line option fovus-storage-upload command line option

J

JOB_CONFIG_FILE_PATH fovus-job-create command line option fovus-pipeline-submit-job command line option JOB_DIRECTORY fovus-job-create command line option fovus-job-download command line option fovus-job-terminate command line option fovus-pipeline-submit-job command line option fovus-task-terminate command line option

JOB_ID fovus-job-delete command line option

L

LOCAL_PATH fovus-pipeline-upload command line option fovus-storage-download command line option fovus-storage-upload command line option

P

PIPELINE_DIRECTORY fovus-pipeline-create command line option fovus-pipeline-download command line option fovus-pipeline-resume command line option

S

SOURCES fovus-storage-copy command line option fovus-storage-move command line option